AG BIODV Software - Links to software developed by the AG BIODV group. Tools for consensus, alignment and definition. Both downloadable and Web-based.
AG BIODV: Software Development for Molecular Biology - AG BIODV is a research group at the GSF National Research Center for Environment and Health. We develop software tools for sequence and promoter analysis.
Animal Bioinformatics/Research Menu Hubsite - Three channels navigate nematode and human researchers to databases, protocols, literature search, news, aging, oxidative stress links, and more - from Vanderbilt Univ.
Artificial Intelligence Research Laboratory at Iowa State University - Development of data-driven knowledge acquisition in computational molecular biology from diverse, distributed, biological data sets with applications in genetic network inference and macromolecular structure-function characterization.
Biodatabase Mining - Whitepaper on database mining in the Human Genome Initiative.
BioExchange.com - portal for Life Sciences - Portal for biotechnology and the life sciences: free e-mail, community, tools, information, industry news and B2B e-commerce.
Bioinfo.PL - polish bioinformatics site - Site of a Polish group working mainly on protein sequence analysis.
Bioinform - A global bioinformatics news service.
Bioinformatics - Bioinformatics aims to publish high quality, peer-reviewed, original scientific papers and excellent review articles in the fields of computational molecular biology, biological databases and genome bioinformatics.
Bioinformatics and Biological Computing - Comprehensive bioinformatics site, with access to multiple database searching and sequence analysis tools - from the Weizmann Inst. of Science.
Bioinformatics and Computational Biology Resources - Compendium of Internet links to bioinformatics centers and institutions, computational biology guides and documentation, software, academic programs, and meetings - from the UCSD Supercomputer Center.
BioInformatics Centre - Singapore - BIC hosts Bio-Resources including BioAgent, BioPortal, APBioNET, BioJournals, BioFTP Sites, BioSoftware, Biotech Directories, BioNet News/Archives, Bio Databases, Bio Catalogs, E-Mail Servers, Virtual Lib, Web Search, Patent Search
Bioinformatics Centre, IMTECH, Chandigarh, India - A bioinformatics research centre with interests such as protein structure prediction and biocomputing. Provides useful software including some they have developed.
Bioinformatics in India - Hub for Bioinformatics professionals of indian origin. Contains links to online tutorials, articles and books on bioinformatics.
Bioinformatics Resource Centre - Provides registered users access to a comprehensive range of programs and databases to aid genomic and proteomic research, including training and help desk - from the MRC Human Genome Mapping Project (UK).
Bioinformatics Unit at University of Manchester - Provides links both to projects and the people involved, comparative dot plots of whole genomes and chromosomal fragments, a browsable ontology of bioinformatics, Comparative interaction tables, 3D visualisation of the yeast protein clusters in the INTERACT database, EMBL-SCALAR, Search at SWISSPROT using Conceptual BLAST.
Bioinformatik - Categorical web directory for bioinformatics - from the Univ. of Düsseldorf.
BioInformer - Quarterly newsletter on bioinformatics research, services, and developments, including interviews, hot topics, research papers, database and software announcements, and a compiled list of worthwhile events - from the European Bioinformatics Inst.
BioMolecular Engineering Research Center - Tools and methods for computational biology. Working on secondary protein structure prediction, providing reliable profiles, and developing new ways to study molecular biology through bioinformatics.
Biomolecular Modelling at the Imperial Cancer Research Fund - Group headed by Dr. Michael Sternberg working on protein bioinformatics tools for fold recognition, modelling, docking, and genome annotation. Developers of 3D-PSSM, 3D-JIGSAW, SAWTED, FTDOCK.
Bionavigator - Provides an integrated set of online tools that allow use of GCG, BLAST and other programs. Also allows data storage. Commercial site with some free services.
Bioplanet Home Page - Bioplanet - A site for the bioinformatics jobs and employers, with education resources, planet chat, Planet CV and Biolinks
BioScience Research Tool: Bioinformatics - Excellent specialized directory of online tools and resources, "selected by BioScientists for BioScientists".
BioScience Research Tool: Databases - Excellent specialized directory of online tools and resources selected mainly for Molecular Geneticists.
BioXtal research group - Bioinformatics section - Mosix and Beowulf class parallel supercomputers applied to bioinformatics. Bioinformatics under Linux. Computational methods for structural resolution using Cristallography and SAXS datas.
Brutlag Bioinformatics Group - Homepage of a group at Stanford University who are interested in the problems of predicting biological function and structure from primary sequence. Developers of EMOTIF, EMATRIX, and 3MOTIF.
C. elegansNet: Model organisms Bioinformatics and Research Menu Hub - Biomedical scientists researching nematodes & other model organisms are navigated to databases of genomes, proteomes, ehanceosomes, transcriptomes, RNA worlds, physiomes, biomes, informatics, medicine, aging, oxidative stress, neuroscience resources and more by multiple channels of elegansnet. Uses frames.
Canadian Bioinformatics Resource - Dedicated to providing researchers with convenient, effective access to high-quality bioinformatics tools and databases.
Cell Biology and Bioinformatic - Contains information about cell biology, bioinformatic and image analysis, and various related links. It also allows download of fully functional and powerful free image analysis software.
Center Structural Biology: Programs and Tools - User guides and worked examples for software applications in structural and molecular biology - from Yale Univ.
Centre for Molecular and Biomolecular Informatics - The Centre for Molecular and Biomolecular Informatics is the national center for in silico molecular sciences.
Computational and BioInformatic Research at WSU - Current research projects include: Predicting disordered regions within proteins from amino acid sequence, Estimation of protein disorder within genomic data, and investigation of the assembly/insertion process of fd Phage.
Computational Biosciences Section - Oak Ridge National Laboratory - The mission of this organization is to address fundamental questions in the life sciences and provide information and analytical resources to the wider biology research community.
Computational Molecular Biology Training Group - Integrative graduate education and research training (IGERT) Computational Molecular Biology at Iowa State University. Major thrusts include bioinformatics, genomics, genome evolution, and macromolecular Structure and function studies.
Computers and Biomedical Research - This journal provides researchers with up-to-date information concerning the use of computers in biomedicine.
CUBIC: Columbia University Bioinformatics Center - Services - PredictProtein for sequence analysis and protein structure prediction , META for single-page interface to validated sequence analysis, Links to WWW services for molecular biology, and analysing entire genomes
DISCO Research Group - Computational Biology and Natural Computing.
Division of Genetic Medicine, Vanderbilt University Medical Center - Homepage of Division of Genetic Medicine. Describes bioinformatic techniques being used, current research projects and faculty, current job openings.
DNA and Protein Analysis Toolkit - Compendium of bioinformatics computing services from The Rockefeller University. Many different ways to analyse biomolecules.
DoubleTwist, Inc. - An application service provider and Internet portal devoted to empowering life scientists by providing online bioinformatics research environments to simplify and accelerate gene discovery.
Ensembl Genome Server - Ensembl is a joint project between EMBL-EBI and the Sanger Centre to develop a distributed software system which produces and maintains automatic annotation on eukaryotic genomes.
Entrez Browser - Retrieves molecular biology data and bibliographic citations from the NCBI's integrated databases.
European Bioinformatics Institute - Portal for research and services in bioinformatics, with databases of nucleic acid and protein sequences, and macromolecular structures - from the EMBL, Hinxton UK.
Exofish - gene finding by sequence homology - Online service to detect exons in human sequence by looking for homology with sequence of a pufferfish, Tetraodon nigroviridis.
Gary Churchill's Statistical Genetics Group - A group at Jackson Laboratories who are developing statistical and computational tools for investigations of genetics and molecular biology. They are studying how natural genetic variation determines phenotypic variation in higher organisms. Major interests seem to be QTL analysis and analysis of expression array results.
GeneCards: Human Genes, Proteins, and Diseases - Database of concise information about human genes (and their mouse homologs), focusing on their cellular functions and medical aspects - from the Weizmann Inst. of Science.
Geneva Bioinformatics (GeneBio) S.A. - GeneBio provides proteomics software tools and databases including SWISS-PROT, PROSITE, SWISS-2DPAGE and Melanie. We also offer a secure version of ExPASy molecular biology web server.
Genome Programs - Site of links to online resources genomics - individual project sites, tools, a journal etc.
GenomeNet WWW server - Very nice collection of bioinformatics tools, including BLAST and MOTIF - from Kyoto Univ.
Hanah Margalit's Bioinformatics Lab - An Israeli lab focussing on: determination of T-cell epitopes along a protein sequence, protein-DNA interaction in transcription regulation, genome-scale analysis, sequence-structure relationship.
Home Page of Dr G P S Raghava - Dr Raghava's group is working in the area of Bioinformatics with particular emphasis on protein structure prediction.
HUJI Bioinformatics - Bioinformatics Server - A Guide to Database Searching, Sequence Analysis, GCG Databases and Documentation Databases: Nucleic Acids, Proteins and Genomes, Useful Bioinformatics Sites on the web, Workshops, and Courses
Human Genome Sequencing Center Search Launcher - On-going project to organize molecular biology-related search and analysis services available on the WWW by function, providing a single point-of-entry for related searches - from the Baylor College of Medicine.
INCBI Irish National Centre for BioInformatics - Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of gene structure prediction programs
Institute of Molecular Bioscience - The Institute for Molecular Bioscience is the centrepiece of a research complex being developed by the University of Queensland in partnership with Australia's CSIRO and other research agencies. Research focus is on animal, biomedical and pharmaceutical research and it has a major division of genomics and bioinformatics.
Interpreting biological sequences - Contains a comprehensive, well maintained, and regularly updated catalogue of sequence analysis links
Journal of Biomedical Informatics - This journal (formerly Computers and Biomedical Research) has been redesigned to reflect a commitment to high-quality original research papers and reviews in the area of biomedical informatics.
KDNuggets.com - A source of information on Data Mining, Web Mining, Knowledge Discovery, and Decision Support Topics, including News, Software, Solutions, Companies, Jobs, Courses, Meetings, Publications, and more. Brings out KDnuggets News an e-newsletter for the Data Mining and Knowledge Discovery community and KDnuggets Awards
Lawrence H. Baker Center for Bioinformatics and Biological Statistics - Bioinformatics faculty, research, training, and resources at Iowa State University.
Links to the Genetic World: Informatics - A compilation of genetic bioinformatics links (databases, data analysis, etc.)
Linnaeus Centre for Bioinformatics - Linnaeus Centre for Bioinformatics, Uppsala, Sweden, research areas include Algorithms and Databases, Genome Studies, Expression and Function, and Structure and Design. Runs courses and seminars in Bioinformatics.
Matrix Science - Mascot is an on-line search engine for protein identification using mass spectrometry data. Search NCBI nr and dbEST using peptide mass fingerprint data, sequence queries, and MS/MS peak lists.
MedMiner - An Internet biomedical data-mining tool for organizing search information gathered from textual or genetic databases - from the NIH National Cancer Inst.
Melanie II 2-D Analysis Software - Powerful, state-of-the-art, 2-D analysis software package with user-friendly interface from the Swiss Institute of Bioinformatics (SIB).
Microarray Database Gateway - Tools for managing, accessing, and analyzing cDNA microarray data generated by the NCI Div. of Clinical Sciences µArray Center - from the BioInformatics and Molecular Analysis Section of the NIH Center for Info. Technology.
Modlab - The Molecular Design Laboratory of the University of Freiburg - Germany - Modlab is a virtual research group at the biological faculty of the University of Freiburg. Its main aim is to complement the biology, chemistry and computer science curricula by teaching and research in bioinformatics and molecular design, and to provide the Gecco!(TM) prediction server.
Molecular Bioinformatics of Gene Regulation - The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them.
Molecular Biology Computation Resources (MBCR) - Includes the MBCR Guide to Computer Aided Sequence Analysis, homology searching, databases, and lists of useful links for molecular biologists - from the Baylor College of Medicine.
Molecular Informatics Resource for the Analysis of Gene Expression - Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction from the Institute for Transcriptional Informatics.
MOTIF Bioinformatics Resources - Multiple Bioinformatic Resource links from the Brutlag Group @ Stanford Univ.
Mouse Genome Informatics - This site contains information on mouse genetic markers, mapping, phenotypes, mammalian homology and gene expression. All data are searchable through a set of Query Forms.
NASA Ames Center for Bioinformatics - Dedicated to the development and application of advanced visualization, computation and simulation technologies to support NASA Space Life Science research.
NIH BioInformatics and Molecular Analysis Section - Numerous computational tools and resources to unite advances in biology with those in computers, informatics, and networking for the genomic and genetic analysis fields of BioInformatics; division of the Computational Bioscience and Engineering Lab at the Center for Information Technology.
Official REBASE Homepage - The restriction enzyme database - from New England Biolabs.
Online Journal of Bioinformatics - Electronic publication of bioinformatics, genetic analysis, programming, database mining, and interfacing genetic data
PIR-International Protein Sequence Database - produces a comprehensive, non-redundant, and expertly annotated protein sequence database. PIR features integrated annotation search to support functional/structural genomics and proteomic research.
RNAGENiE - An online program which locates novel RNA genes in genomic DNA.
SA National Bioinformatics Institute - SANBI aims to bring genome information, computational biology, and analytical tools to the South African research community. Hosts SA National EMBNet Node, provides links to Sequence Retrieval System (SRS), GeneKraal, and TB Genomes Analysis Server. Research in Sequence Tag Alignment and Consensus Knowledgebase (STACK). Databases include BLAST search in Mycobacterium genome.
Searching GenBank - Text and similarity searching, provided by the National Center for Biotechnology Information (NCBI).
Sequence Analysis (Bielefeld University Bioinformatics Server) - Collection of sequence analysis tools.
Sequence Analysis Software - Several basic online software tools for DNA sequence analysis - from Attotron Biosensor Corp.
snowdeal.org > {bio,medical}informatics - A weblog that provides daily updates and links to news items and stories of interest to bioinformatics community.
Society for Bioinformatics in the Nordic countries - SocBiN is a non-profit organisation for people working with and interested in bioinformatics. One task of the society is to arrange annual conferences on Bioinformatics, of which the first took place April 1999 in Lund.
SUPERFAMILY HMM library for Structural Assignments to protein sequences and Genomes - This server is a Hidden Markov Model library providing 3 services: sequence searching, sequence alignments and genome assignments.
Support Vector Machines - Book - Complete, simple and rigorous introduction to Support Vector Machines, learning algorithm widely used in data mining, machine vision, bioinformatics.
Systolic Accelerator for Molecular Biological Applications (SAMBA) - Processor array for speeding comparison of biological sequences using a parameterized version of the rigorous Smith-Waterman algorithm - from the IRISA, Rennes FR.
The Bioinformatics Resource - Organizing biennial "Genes, Proteins and Computers Conference" and regular scientific meetings, and providing an on-line research newsletter and other resources for the Bioinformatics Community - from the MRC Human Genome Mapping Project Resource Centre.
The Functional Genomics Jump Station - Information, links, and news on all aspects of functional genomic analysis - from the Istituto Scientifico-San Raffaele, IT.
The Swiss Institute of Bioinformatics Homepage (SIB) - SIB is operating the ExPASy proteomics server and the Swiss node of EMBnet. The teaching activities include a series of post-graduate courses given at the Universities of Geneva and Lausanne, as well as at the EPFL, and a "Masters Degree in Bioinformatics". Major research areas include the development of integrated databases and software resources in the field of Proteomics.
Theoretical and computational biology group - The Theoretical and computational biology group at the MRC Laboratory of Molecular Biology in Cambridge is headed by Cyrus Chothia. The group has a strong interest in genome analysis and protein structure.
Transterm - a database of mRNA regions and motifs - Transterm - an interactive database of mRNA regions and motifs from all species and genomes. Users can browse the pre-computed data tables, search the sequence databases or search their own sequences.
UCLA Bioinformatics - Main web site for the UCLA Bioinformatics program.
Virtual Genome Center - Online computational resources for PCR primer selection, similarity searching- from the Univ. of Minnesota.
Virtual Institute of Bioinformatics in Eire - The Virtual Institute of Bioinformatics in Eire (VIBE) is an initiative to consolidate bioinformatics research in the Republic of Ireland.
Visualisation for Bioinformatics - DNA microarray Visualisation Resources, Papers, Articles, Posters and Talks.